|crick| Crick's OMERO guide
===========================
This OMERO guide is specific to the Crick's OMERO implementations. It offers step-by-step instructions on how to use components of the OMERO platform at the Crick.
Getting started
---------------
The OMERO guide is divided into several parts:
:doc:`core_features` covers OMERO terminology and concepts of project, dataset, image, metadata, users, groups,etc.
:doc:`web_addons` includes viewing using
* default viewer: imageviewer,
* OMERO.iviewer,
* OMERO.PathViewer,
* OMERO.figure - for making figures.
:doc:`import` covers how to put images into OMERO via in-place import and how to access (directly instead of download) that after import
:doc:`external_tools` introduces how to analyse data using third party tools
* QuPath |qupath|.
More information
----------------
To learn more about OMERO in general, we recommend that you first visit the `Open Microscopy Environment Website `_.
You can also watch videos of OMERO features or workshop recordings on the `Open Microscopy Environment YouTube channel `_. Please be aware that some of the operations are different from the Crick's OMERO.
.. |qupath| image:: images/logos/qupath.png
:width: 0.46875in
:height: 0.28125in
.. |crick| image:: images/logos/CRICK_Brandmark_01_transparent.png
:width: 1in
:height: 1in
.. toctree::
:maxdepth: 1
:hidden:
core_features
web_addons
import
external_tools