Module plateplot.transforms

Transform and aggregate data before plotting.

Functions

def cv(x)

Expand source code

def cv(x):
    """
    Parameters
    -----------
    x : array-like

    Notes
    ------
    Coefficient of variation should not be used on z-scored
    values, or any other values which could be negative.

    Returns
    --------
    array-like
        same dimensions as input
    """
    return np.std(x, ddof=1) / np.mean(x) * 100

Parameters

x : array-like

 

Notes

Coefficient of variation should not be used on z-scored values, or any other values which could be negative.

Returns

array-like

same dimensions as input

def group(df, well, val, plate)

Expand source code

def group(df, well, val, plate):
    """
    Parameters
    -----------
    df : pandas.DataFrame
    well : str
    val : str
    plate : str

    Returns
    --------
    pandas.DataFrameGroupBy
    """
    df_sub = df[[well, val, plate]]
    df_grouped = df_sub.groupby([plate, well], as_index=False, sort=False)
    return df_grouped

Parameters

df : pandas.DataFrame

 

well : str

 

val : str

 

plate : str

 

Returns

pandas.DataFrameGroupBy