deformablemesh.ringdetection

Class ContractileRingDetector

java.lang.Object

deformablemesh.ringdetection.ContractileRingDetector

All Implemented Interfaces:

Iterable<Integer>

public class ContractileRingDetector
extends Object
implements Iterable<Integer>

This used to be a way to initialize a contractile ring. It is becoming a tool for reviewing segmentations. It stores a time series of planes. Created by msmith on 1/20/14.

Field Summary

Fields

Modifier and Type	Field and Description
double	ALPHA
double	BETA
double	GAMMA
double	SIGMA
double	WEIGHT

Constructor Summary

Constructors

Constructor and Description
ContractileRingDetector()

Method Summary

Modifier and Type	Method and Description
ij.process.ImageProcessor	createBinarySlice()
void	createFurrowSlice(int frame)
List<double[]>	get3DCoordinatesFromFurrowPlane(List<double[]> pts)
Furrow3D	getFurrow()
Furrow3D	getFurrow(int i)
Map<Integer,Furrow3D>	getFurrows()
ij.process.ImageProcessor	getFurrowSlice()
Iterator<Integer>	iterator()
List<List<double[]>>	mapTo2D(List<List<double[]>> input)
void	putFurrow(int frame, Furrow3D furrow)
void	setFrame(int frame)
void	setImageStack(MeshImageStack stack)
void	setThresh(double t)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.lang.Iterable

forEach, spliterator

Field Detail

ALPHA

public double ALPHA

BETA

public double BETA

GAMMA

public double GAMMA

WEIGHT

public double WEIGHT

SIGMA

public double SIGMA

Constructor Detail

ContractileRingDetector

public ContractileRingDetector()

Method Detail

setImageStack

public void setImageStack(MeshImageStack stack)

setThresh

public void setThresh(double t)

createFurrowSlice

public void createFurrowSlice(int frame)

getFurrowSlice

public ij.process.ImageProcessor getFurrowSlice()

createBinarySlice

public ij.process.ImageProcessor createBinarySlice()

mapTo2D

public List<List<double[]>> mapTo2D(List<List<double[]>> input)

iterator

public Iterator<Integer> iterator()

Specified by:

iterator in interface Iterable<Integer>

getFurrow

public Furrow3D getFurrow(int i)

getFurrow

public Furrow3D getFurrow()

setFrame

public void setFrame(int frame)

putFurrow

public void putFurrow(int frame,
                      Furrow3D furrow)

get3DCoordinatesFromFurrowPlane

public List<double[]> get3DCoordinatesFromFurrowPlane(List<double[]> pts)

getFurrows

public Map<Integer,Furrow3D> getFurrows()