deformablemesh.util

Class MeshImageOps

java.lang.Object

deformablemesh.util.MeshImageOps

public class MeshImageOps
extends Object

Created by msmith on 2/9/16.

Constructor Summary

Constructors

Constructor and Description
MeshImageOps()

Method Summary

Modifier and Type	Method and Description
static void	applyMask(ij.ImageStack original_stack, ij.ImageStack binary_stack)
static double	calculateVolume(ij.ImageStack binary)
static boolean	checkNeighbors(int x, int y, int z, ij.ImageStack stack) Checks the neighborhood for a zero to see if this point lies on an edge.
static double[]	getCenter(ij.ImageStack binary)
static void	refineBinary(ij.ImageStack binary_stack, ij.ImageStack original_stack)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MeshImageOps

public MeshImageOps()

Method Detail

refineBinary

public static void refineBinary(ij.ImageStack binary_stack,
                                ij.ImageStack original_stack)

checkNeighbors

public static boolean checkNeighbors(int x,
                                     int y,
                                     int z,
                                     ij.ImageStack stack)

Checks the neighborhood for a zero to see if this point lies on an edge. This should be used if the pixel at x,y,z is 1. Assumes all values outside of image are zero.

Parameters:

x -

y -

z -

stack - binary image where 0 is not the object and > 0 is the object.

Returns:

if there is a zero in the 6-box neighborhood.

applyMask

public static void applyMask(ij.ImageStack original_stack,
                             ij.ImageStack binary_stack)

calculateVolume

public static double calculateVolume(ij.ImageStack binary)

getCenter

public static double[] getCenter(ij.ImageStack binary)