External Software and OMERO
Here we describe how to use third party tools to analyze data stored in OMERO. We provide installation instructions, step-by-step workflow either to use the User Interface or the API of those tools.
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QuPath is a free open-source cross-platform software application designed for bioimage analysis - and specifically to meet the needs of whole slide image analysis and digital pathology. We demonstrate how to integrate QuPath and OMERO using the User Interface. For more details, go to QuPath Wiki page. |
