OMERO.web viewing data

OMERO.web is a web browser based interface for OMERO. - There are a number of viewers that are available to view an image.

  • After choosing a thumbnail on the middle panel, you can navigate to the right panel and click on the icon next to the fullviewericon viewerlisticon

  • You will find a list of viewers that are available.

  • The default viewer is the basic Image viewer.

  • However if the image is a slide, Pathviewer will open instead.

    webviewers

OMERO.imageviewer

OMERO.imageviewer is a basic 2D viewer which can open and browse multi-t, multi-z and multi-channel images and allows to show Regions of Interest (ROIs) and adjust rendering details including displaying histogram.

OMERO.iviewer

We introduce OMERO.iviewer, a 2D viewer which can open and browse multi-t, multi-z and multi-channel images and allows to draw and edit Regions of Interest (ROIs) and perform some rudimentary image analysis. It also offers the ability to view several images at the same time and synchronize the view. For more information, see https://github.com/ome/omero-iviewer.

OMERO.PathViewer

OMERO.PathViewer is a proprietary 2D viewer developed by Glencoe software. It is designed specifically for digital pathology. For more information, see https://www.glencoesoftware.com/products/pathviewer/

OMERO.figure

OMERO.figure is a popular tool for creating figures from Images in OMERO. Image metadata can be used to facilitate figure creation. For more information, see https://github.com/ome/omero-figure.

  1. For the tutorial we are using a different set of instructions.

    • Right click on the link below and open it on another tab of your browser. - You can find the instruction as a PDF file on the attachment on the link of this image below: https://omero-prod.camp.thecrick.org/webclient/?show=dataset-73

      • You will find Attachments on the left panel. Click on it and you will a file attached to this dataset.

      • Click on the 231103-Two Brain Figure in OMERO.pdf to download and open the file for instructions.

    • Please follow the instructions from your instructor.

  2. You can also follow the instructions below

Contents