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PITCH study: pre-built chronogram

pitch_chronogram.Rd

A provided example derived from the de-identified PITCH dataset available here, under a CC-BY-4.0 licence: https://data.mendeley.com/datasets/fyp26zjgmj/1

Usage

pitch_chronogram

Format

pitch_chronogram A chronogram

pitch_chronogram

Example pitch_chronogram

Details

Published: 3 November 2021,

DOI: 10.17632/fyp26zjgmj.1

Contributors: Rebecca Payne, Susan Hopkins, Victoria Hall, Christina Dold, Christopher Duncan, Alex Richter, Miles Carroll, Gavin Screaton, Thushan de Silva, Lance Turtle, Paul Klenerman, Susanna Dunachie, PITCH Consortium authors.

The dataset supports Payne et al. Immunogenicity of standard and extended dosing intervals of BNT162b2 mRNA vaccine Cell 2021.

NOTE: Changes have been made to the de-identified public dataset (DOI: 10.17632/fyp26zjgmj.1).

  1. the public data reports dates as MM/YYYY. To build a chronogram we have assumed 15/MM/YYYY for dose 1, and used the available intervals in days to place the remaining data in time. For illustration purposes, we need plausible DD/MM/YYYY dates - they are not real.

  2. not all of the public dataset has been used in this example (some assays not included).

NB: If your motivation is to re-analyse Payne et al. for scientific reasons, rather than to explore this package, do not use this example dataset. Instead, consult the de-identified Mendeley data (DOI: 10.17632/fyp26zjgmj.1), or the Cell manuscript's data and code availability statement.

Examples

data("pitch_chronogram")